* Miscellaneous VEP tweaks

* Benb/validate with allele type (#785)

* Bump requirements

* add validation

* format

* Fix syntax (#787)

* Bump requirements

* add validation

* format

* Fix syntax

* allele registry (#759)

* add allele registry step in update vat with samples task

* shh

* existing tests pass

* fix test deps

* test

* annotation_dependencies

* ruff

* take out the zero check

* fix requirements new task name

* move vep into new variants task

* only annotate lookup from callset_ht

* clean up mocks

* r

* working

* working?

* not that

* minor changes and test cases

* most recent script

* working version

* fix the test

* implement ht chunking

* fix patches

* fix patches

* register now yields id map of returned caids

* r

* fix some tests

* return a hail table instead

* use __str__

* log to track variants we can't map back

* move to gcs with flag

* union ar_ht instead of a bunch of left joins to prevent CAID, CAID_1, CAID_2...

* cleaner

* it is all coming together now
'

* gnomad ids for 37'

* use genomicalleles and gnomad ids

* secrets

* secret

* move stuff out of environment file

* add more logging

* fix test

* fix the other test

* ruff

* test

* comments

* o

* Reference Data Update Type Equality Check (#789)

* Finish validity check test

* ruff

* update dbnsfp field

* More types

* more types

* ugh

* twiddle it back

* update type

* more tweaks

* lint

* fix floats

* decompose

* ruff formatg

* Update compare_globals_test.py

* print lint rule (#791)

* tiny ar bug (#792)

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Co-authored-by: Benjamin Blankenmeister <bblanken@broadinstitute.org>
Co-authored-by: Benjamin Blankenmeister <b.p.blankenmeister@gmail.com>